Seminars and Colloquia by Series

Modeling and simulation of two phase flow on rough surface

Series
Applied and Computational Mathematics Seminar
Time
Friday, August 20, 2010 - 13:00 for 1 hour (actually 50 minutes)
Location
Skiles 154
Speaker
Xiao-Ping Wang Hong Kong University of Science and Technology
In this talk, I will  describe a newly developed phase field model for two phase fluid flow based on Cahn Hilliard  Navier Stokes equation with generalized Navier boundary condition.  Homogenization method is used to derive  the Wenzel's and Cassie's equations for two phase flow on rough surfaces. Efficient numerical method for the model will also be discussed. We then present some numerical results on two phase flow on rough and patterned surfaces.

CANCELLED - Nonlinear resonance analysis as a base for novel numerical models

Series
Applied and Computational Mathematics Seminar
Time
Monday, April 26, 2010 - 13:00 for 1 hour (actually 50 minutes)
Location
Skiles 255
Speaker
Elena KartaschovaJohannes Kepler University
Nonlinear Resonance Analysis (NRA) is a natural next step after Fourieranalysis developed for linear PDEs. The main subject of NRA isevolutionary nonlinear PDEs, possessing resonant solutions. Importance ofNRA is due to its wide application area -- from climatepredictability to cancer diagnostic to breaking of the wing of an aircraft.In my talk I plan to give a brief overview of the methods and resultsavailable in NRA, and illustrate it with some examples from fluid mechanics.In particular, it will be shown how1) to use a general method of q-class decomposition for computing resonantmodes for a variety of physically relevant dispersion functions;2) to construct NR-reduced models for numerical simulations basing on theresonance clustering; theoretical comparision with Galerkin-like models willbe made and illustrated by the results of some numerical simulations withnonlinear PDE.3) to employ NR-reduced models for interpreting of real-life phenomena (inthe Earth`s atmosphere) and results of laboratory experiments with watertanks.A short presentation of the software available in this area will be given.

Sliding Modes and Fundamental Matrix Solutions of Piecewise Smooth Differential Systems

Series
Applied and Computational Mathematics Seminar
Time
Monday, April 26, 2010 - 13:00 for 1 hour (actually 50 minutes)
Location
Skiles 255
Speaker
Luca DieciSchool of Mathematics, Georgia Tech
In this seminar we consider piecewise smooth differential systems of Filippov type, in which the vector field varies discontinuously as solution trajectories reach one or more surfaces. Emphasis is on the fundamental matrix solution associated to these systems. We consider the cases of transversal intersection and of sliding motion on a co-dimension one surface and when sliding motion takes place on a co-dimension two surface (the intersection of two co-dimension one surfaces). [Joint work with L.Lopez, Univ. of Bari]

High order numerical methods for differential equations with singular sources

Series
Applied and Computational Mathematics Seminar
Time
Monday, April 19, 2010 - 13:00 for 1 hour (actually 50 minutes)
Location
Skiles 255
Speaker
Jae-Hun JungMathematics, SUNY Buffalo
Solutions of differential equations with singular source terms easily becomenon-smooth or even discontinuous. High order approximations of suchsolutions yield the Gibbs phenomenon. This results in the deterioration ofhigh order accuracy. If the problem is nonlinear and time-dependent it mayalso destroy the stability. In this presentation, we focus on thedevelopment of high order methods to obtain high order accuracy rather thanregularization methods. Regularization yields a good stability condition,but may lose the desired accuracy. We explain how high order collocationmethods can be used to enhance accuracy, for which we will adopt severalmethods including the Green’s function approach and the polynomial chaosmethod. We also present numerical issues associated with the collocationmethods. Numerical results will be presented for some differential equationsincluding the nonlinear sine-Gordon equation and the Zerilli equation.

Influence of Cellular Substructure on Gene Expression and Regulation

Series
Applied and Computational Mathematics Seminar
Time
Monday, April 12, 2010 - 13:00 for 1 hour (actually 50 minutes)
Location
Skiles 255
Speaker
Samuel IsaacsonBoston University Mathematics Dept.
We will give an overview of our recent work investigating the influence of incorporating cellular substructure into stochastic reaction-diffusion models of gene regulation and expression. Extensions to the reaction-diffusion master equation that incorporate effects due to the chromatin fiber matrix are introduced. These new mathematical models are then used to study the role of nuclear substructure on the motion of individual proteins and mRNAs within nuclei. We show for certain distributions of binding sites that volume exclusion due to chromatin may reduce the time needed for a regulatory protein to locate a binding site.

Tight frame, Sparsity and Bregman algorithms

Series
Applied and Computational Mathematics Seminar
Time
Monday, April 5, 2010 - 13:00 for 1 hour (actually 50 minutes)
Location
Skiles 255
Speaker
Jianfeng CaiDep. of Math. UCLA
 Tight frame is a generalization of orthonormal basis. It  inherits most good properties of orthonormal basis but gains more  robustness to represent signals of intrests due to the redundancy. One can  construct tight frame systems under which signals of interests have sparse  representations. Such tight frames include translation invariant wavelet,  framelet, curvelet, and etc. The sparsity of a signal under tight frame systems has three different formulations, namely, the analysis-based sparsity, the synthesis-based one, and the balanced one between them. In this talk, we discuss Bregman algorithms for finding signals that are sparse under tight frame systems with the above three different formulations. Applications of our algorithms include image inpainting, deblurring, blind deconvolution, and cartoon-texture decomposition. Finally, we apply the linearized Bregman, one of the Bregman algorithms, to solve the problem of matrix completion, where we want to find a low-rank matrix from its incomplete entries. We view the low-rank matrix as a sparse vector under an adaptive linear transformation which depends on its singular vectors. It leads to a singular value thresholding (SVT) algorithm.

[Special day and location] Electrostatic effects on DNA dynamics in fluid by the generalized immersed boundary method

Series
Applied and Computational Mathematics Seminar
Time
Friday, April 2, 2010 - 13:00 for 1 hour (actually 50 minutes)
Location
Skiles 269
Speaker
Sookkyung LimDepartment of Mathematical Sciences, University of Cincinnati
We investigate the effects of electrostatic and steric repulsion on thedynamics of pre-twisted charged elastic rod, representing a DNA molecule,immersed in a viscous incompressible fluid. Equations of motion of the rod, whichinclude the fluid-structure interaction, rod elasticity, and electrostatic interaction, are solved by the generalized immersed boundary method. Electrostatic interaction is treated using a modified Debye-Huckel repulsive force in which the electrostatic force depends on the salt concentration and the distance between base pairs, and a close range steric repulsion force to prevent self-penetration. After perturbation a pretwisted DNA circle collapses into a compact supercoiled configuration. The collapse proceeds along a complex trajectory that may pass near several equilibrium configurations of saddle type, before it settles in a locally stable equilibrium. We find that both the final configuration and the transition path are sensitive to the initial excess link, ionic stregth of the solvent, and the initial perturbation.

Optimized Schwarz Methods in the numerical solution of PDE

Series
Applied and Computational Mathematics Seminar
Time
Monday, March 29, 2010 - 13:00 for 1 hour (actually 50 minutes)
Location
Skiles 255
Speaker
Luca Gerardo GiordaDep. of Mathematics and Computer Science, Emory University
Schwarz algorithms have experienced a second youth over the lastdecades, when distributed computers became more and more powerful andavailable. In the classical Schwarz algorithm the computational domain is divided into subdomains and Dirichlet continuity is enforced on the interfaces between subdomains. Fundamental convergence results for theclassical Schwarzmethods have been derived for many partial differential equations. Withinthis frameworkthe overlap between subdomains is essential for convergence. More recently, Optimized Schwarz Methods have been developed: based on moreeffective transmission conditions than the classical Dirichlet conditions at theinterfaces between subdomains, such algorithms can be used both with and without overlap. On the other hand, such algorithms show greatly enhanced performance compared to the classical Schwarz method. I will present a survey of Optimized Schwarz Methods for the numerical approximation of partial differential equation, focusing mainly on heterogeneous convection-diffusion and electromagnetic problems.

CANCELLED

Series
Applied and Computational Mathematics Seminar
Time
Monday, March 15, 2010 - 13:00 for 1 hour (actually 50 minutes)
Location
Skiles 255
Speaker
Maria CameronCourant Institute, NYU
The overdamped Langevin equation is often used as a model in molecular dynamics. At low temperatures, a system evolving according to such an SDE spends most of the time near the potential minima and performs rare transitions between them. A number of methods have been developed to study the most likely transition paths. I will focus on one of them: the MaxFlux functional.The MaxFlux functional has been around for almost thirty years but not widely used because it is challenging to minimize. Its minimizer provides a path along which the reactive flux is maximal at a given finite temperature. I will show two ways to derive it in the framework of transition path theory: the lower bound approach and the geometrical approach. I will present an efficient way to minimize the MaxFlux functional numerically. I will demonstrate its application to the problem of finding the most likely transition paths in the Lennard-Jones-38 cluster between the face-centered-cubic and icosahedral structures.

Energetic Variational Approaches: Free Interface Motion and Viscoelasticity

Series
Applied and Computational Mathematics Seminar
Time
Monday, March 8, 2010 - 13:00 for 1 hour (actually 50 minutes)
Location
Skiles 255
Speaker
Chun LiuPenn State/IMA
Almost all models for complex fluids can be fitted into the energetic variational framework. The advantage of the approach is the revealing/focus of the competition between the kinetic energy and the internal "elastic" energies. In this talk, I will discuss two very different engineering problems: free interface motion in Newtonian fluids and viscoelastic materials. We will illustrate the underlying connections between the problems and their distinct properties. Moreover, I will present the analytical results concerning the existence of near equilibrium solutions of these problems.

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