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Monday, March 9, 2015 - 14:00 ,
Location: Skiles 005 ,
Prof. Jianfeng Lu ,
Duke University ,
jianfeng@math.duke.edu ,
Organizer: Molei Tao

Understanding rare events like transitions of chemical system
from reactant to product states is a challenging problem due to the time
scale separation. In this talk, we will discuss some recent progress in
mathematical theory of transition paths. In particular, we identify and
characterize the stochastic process corresponds to transition paths. The
study of transition path process helps to understand the transition
mechanism and provides a framework to design and analyze numerical
approaches for rare event sampling and simulation.

Monday, March 2, 2015 - 14:00 ,
Location: Skiles 005 ,
Professor Scott McCalla ,
Montana State University ,
Organizer: Martin Short

The existence, stability, and bifurcation structure of localized
radially symmetric solutions to the Swift--Hohenberg equation is
explored both numerically through continuation and analytically through
the use of geometric blow-up techniques. The bifurcation structure for
these solutions is elucidated by formally treating the dimension as a
continuous parameter in the equations. This reveals a family of
solutions with an anomalous amplitude scaling that is far larger than
expected from a formal scaling in the far field. One key advantage of
the geometric blow-up techniques is that a priori knowledge of this
scaling is unnecessary as it naturally emerges from the construction.
The stability of these patterned states will also be discussed.

Monday, February 16, 2015 - 14:00 ,
Location: Skiles 005 ,
Prof. Matthew Lin ,
National Chung Cheng University, Georgia Tech ,
mhlin@ccu.edu.tw ,
Organizer: Chi-Jen Wang

Reference[1] Moody T. Chu

, Nonnegative Inverse Eigenvalue and Singular Value Problems, SIAM J. Numer. Anal (1992).[2] Wei Ma and Zheng-J. Bai, A regularized directional derivative-based Newton method for inverse singular value problems, Inverse Problems (2012).

Nonnegative inverse eigenvalue and singular value problems have been a research focus for decades. It is true that an inverse problem is trivial if the desired matrix is not restricted to any structure. This talk is to present two numerical procedures, based on a conquering procedure and an alternating projection process, to solve inverse eigenvalue and singular value problems for nonnegative matrices, respectively. In theory, we also discuss the existence of nonnegative matrices subject to prescribed eigenvalues and singular values. Though the focus of this talk is on inverse eigenvalue and singular value problems with nonnegative entries, the entire procedure can be straightforwardly applied to other types of structure with no difficulty.

Monday, February 9, 2015 - 14:00 ,
Location: Skiles 005 ,
Timo Eirola ,
Aalto University, Helsinki, Finland ,
Organizer: Martin Short

We consider three different approaches to solve the equations for electron density around nuclei particles.
First we study a nonlinear eigenvalue problem and apply Quasi-Newton methods to this.
In many cases they turn to behave better than the Pulay mixer, which widely used in physics community.
Second we reformulate the problem as a minimization problem on a Stiefel manifold.
One that formed from mxn matrices with orthonormal columns.
Then for Quasi-Newton techniques one needs to transfer the secant conditions to the new tangent space, when moving on the manifold. We also consider nonlinear conjugate gradients in this setting.
This minimization approach seems to work well especially for metals, which are known to be hard.
Third (if time permits) we add temperature (the first two are for ground state). This means that we need to include entropy in the energy and optimize also with respect to occupation numbers.
Joint work with Kurt Baarman and Ville Havu.

Monday, January 26, 2015 - 14:00 ,
Location: Skiles 005 ,
Raffaele D'Ambrosio ,
GA Tech ,
Organizer: Martin Short

The talk is the continuation of the previous one entitled
"Structure-preserving numerical integration of ordinary and partial
differential equations [8]" and is aimed to present both classical and
more recent results regarding the numerical treatment of nonlinear
differential equations, both for deterministic and stochastic problems.
The perspective is that of introducing numerical methods which act as
structure-preserving integrators, with special emphasys to numerically
retaining dissipativity properties possessed by the problem.

Monday, December 1, 2014 - 14:00 ,
Location: Skiles 005 ,
Raffaele D'Ambrosio ,
GA Tech ,
Organizer: Martin Short

It is the
purpose of this talk to analyze the behaviour of multi-value numerical
methods acting as structure-preserving integrators for the numerical
solution of ordinary and partial differential equations (PDEs), with
special emphasys to Hamiltonian problems and reaction-diffusion PDEs. As
regards Hamiltonian problems, we provide a rigorous long-term error
analyis obtained by means of backward error analysis arguments, leading
to sharp estimates for the parasitic solution components and for the
error in the Hamiltonian. As regards PDEs, we consider
structure-preservation properties in the numerical solution of
oscillatory problems based on reaction-diffusion equations, typically
modelling oscillatory biological systems, whose solutions oscillate both
in space and in time. Special purpose numerical methods able to
accurately retain the oscillatory behaviour are presented.

Monday, November 17, 2014 - 14:00 ,
Location: Skiles 005 ,
Dr. Mohammad Farazmand ,
GA Tech Physics ,
Organizer: Martin Short

Recent experimental and numerical observations have shown the significance
of the Basset--Boussinesq memory term on the dynamics of small spherical
rigid particles (or inertial particles) suspended in an ambient fluid flow.
These observations suggest an algebraic decay to an asymptotic state, as
opposed to the exponential convergence in the absence of the memory term.
I discuss the governing equations of motion for the inertial particles,
i.e. the Maxey-Riley equation, including a fractional order derivative in
time. Then I show that the observed algebraic decay is a universal property
of the Maxey--Riley equation. Specifically, the particle velocity decays
algebraically in time to a limit that is O(\epsilon)-close to the fluid
velocity, where 0<\epsilon<<1 is proportional to the square of the ratio of
the particle radius to the fluid characteristic length-scale. These results
follows from a sharp analytic upper bound that we derive for the particle
velocity.

Friday, November 14, 2014 - 11:00 ,
Location: Skiles 005 ,
Professor Andre Martinez-Finkelshtein ,
Universidad de Almería ,
Organizer: Martin Short

The medical imaging benefits from the advances in constructiveapproximation, orthogonal polynomials, Fourier and numerical analysis,statistics and other branches of mathematics. At the same time, the needs of the medical diagnostic technology pose new mathematical challenges. This talk surveys a few problems, some of them related to approximation theory, that have appeared in my collaboration with specialists studying some pathologies of the human eye, in particular, of the cornea, such as:- reconstruction of the shape of the cornea from the data collected bykeratoscopes- implementation of simple indices of corneal irregularity- fast and reliable computation of the through-focus characteristics of a human eye.

Monday, November 3, 2014 - 14:00 ,
Location: Skiles 005 ,
Dr. Matthew Calef ,
Los Alamos National Lab ,
Organizer: Martin Short

Observations of high energy density environments, from supernovae
implosions/explosions to inertial confinement fusion, are determined by
many different physical effects acting concurrently. For example, one
set of equations will describe material motion, while another set will
describe the spatial flow of energy. The relevant spatial and temporal
scales can vary substantially. Since direct measurement is difficult if
not impossible, and the relevant physics happen concurrently, computer
simulation becomes an important tool to understand how emergent behavior
depends on the constituent laws governing the evolution of the system.
Further, computer simulation can provide a means to use observation to
constrain underlying physical models.
This talk shall examine the challenges associated with developing
computational multiphysics simulation. In particular this talk will
outline some of the physics, the relevant mathematical models, the
associated algorithmic challenges, some of which are driven by emerging
compute architectures. The problem as a whole can be formidable and an
effective solution couples many disciplines together.

Monday, October 20, 2014 - 14:00 ,
Location: Skiles 005 ,
Dr. Maria D'Orsogna ,
Cal State University Northridge ,
Organizer: Martin Short

Given their ubiquity in physics, chemistry and materialsciences, cluster nucleation and growth have been extensively studied,often assuming infinitely large numbers of buildingblocks and unbounded cluster sizes. These assumptions lead to theuse of mass-action, mean field descriptions such as the well knownBecker Doering equations. In cellular biology, however, nucleationevents often take place in confined spaces, with a finite number ofcomponents, so that discrete and stochastic effects must be takeninto account. In this talk we examine finite sized homogeneousnucleation by considering a fully stochastic master equation, solvedvia Monte-Carlo simulations and via analytical insight. We findstriking differences between the mean cluster sizes obtained from ourdiscrete, stochastic treatment and those predicted by mean fieldones. We also study first assembly times and compare results obtained from processes where only monomer attachment anddetachment are allowed to those obtained from general coagulation-fragmentationevents between clusters of any size.